Wednesday, September 19, 2012

Lab 2 Report

Objective
 The objective of the lab was to practice on subculturing techniques and also to use Riddell slide mounting technique to look at different structures of different Aspergillus species.

Materials and Methods
  1. Cut a block agar 1cm x 1cm
  2. Place the block on the surface of the agar
  3. Inoculate the agar block at its center
  4. Place a sterile coverslip on the cut agar block
  5. Incubate at 25C for 2-3 days until sporulation occurs
  6. Get the slide and place it on a drop of water onto a clean glass slide and observe under a microscope


Results

 Alternaria brassicola conidia and conidiophores
                                           Alternaria conidia and conidiophores
Chlamidosporium spp chlamidopsores
                                                        Aspergillus flavus
                                            Aspergillus nidulus
                                                   Aspergillus nidulus  
                                           Aspergillus parasitica
                                              Aspergillus sojae
                                                Aspergillus sojae
                                          Aspergillus tamari
                                             Aspergillus tamari
                                           Thelioviopsis bassicola
                                          Thelioviopsis bassicola
Thelioviopsis bassicola

Discussion
Riddell slide mounting technique and also some of its modified techniques proved to be a powerful and effective technique to observe delicate fungal structures without distorting them on the slide as in other techniques such as the squash mounts. It is however, important ensure that the slides made using the Riddell mounting technique must be done 3-4 after incubation as sometimes the fungal species may over grow on the cover slip resulting in a too crowded slide.

Conclusion
Riddell slide mounting technique and some modified version of this technique allows observation of intact fungal structures, in this case it was possible to identify Aspergillus spp and group them on whether they were bisereate or unisereate.

Monday, September 17, 2012

Lab 1


Objective
The overall objectives our first lab session was to orient us on how to properly and efficiently use microscopes and prepare slide mounts in such a way that excludes contamination.

Sterile techniques

1.      Surface clean table with bleach or 30% alcohol

2.      Turn on Bunsen burner to a sterile environment through convection of hot air.

3.       Work close to the burner as any area outside the “convection zone” is not sterile

4.      Flame needle and allow it to cool before transferring specimen to slide.

Use of microscopes
It was demonstrated to us on how safely microscopes. In addition there was a tutorial on how best to set up the microsopes to ensure clarity on sample observation. Of emphasis was the need to ensure that Köhler was set up on a compound microscope before use.

The demonstrations also covered how best to manipulate the amount mainly light and color balances so as to take good specimen pictures using QCapture software

Preparation of squash and tape mounts

a)      Squash mount

1.      Squash mounts were prepared by getting a small specimen sample especially on the edge of the hyphal growth in a petri dish.

2.      The small piece of specimen was placed on a slide.

3.      A drop of sterile water was added

4.      The specimen was covered with a cover slip and the using the back of the needle handle to flatten the specimen under the cover slip and observed under a microscope.

 

b)      Tape mounts

1.      A 1-0.5 of an inch one sided tape was cut

2.      The tape was then used to slightly touch fungal specimen in a petri dish

3.      The tape was then placed on a slide and slightly pressed so that it was on a fixed position on a slide

4.      A drop of water was used put on top of the tape and it was observed under a microscope

Hemocytometer
The protocol followed was as the one described in the provided on the class lab

Results


Discussion

Emphasis was given on how best to handle and use microscopes, taking of sample pictures using Q Capture software. In addition other safety issues in the lab were also highlighted. From trying different slide mount types it was clear that squash mounts did not always result in observable intact structures on the other hand tape mounts preserved the intact structures in most cases. Spore enumerations using Hemocytometer requires a consistency throughout the counting process with respect to spores on border lines, which squares to count, spores that are tightly attached to each other and on levels (color intensity) for accepting spores as  living or dead spores. Cell suspensions should be dilute enough so that the cells do not overlap each other. In addition extra care should be taken on calculations as significant figures are supposed to be kept within the range of the Hemocytometer accuracy, minor error may reflect huge differences when spore numbers are corrected by dilution factor.

Personally I think this lab is a fundamental step for any proper fungal diagnosis as it dealt with issues that usually can make diagnosis of fungi frustrating namely a failure to effectively use the microscope and poor slide mounts which makes it difficult to observe important fungal diagnostic features or structures.

Tuesday, September 4, 2012

Introduction

 
 
Hi all my name is Maxwell Handiseni. I am second year PhD student and my major is Plant pathology. My research emphasis is on management of a soil borne fungi Rhizoctonia solani AG1-1A which causes rice sheath blight in rice using biofumigation approach. We are also hoping to analyse soil microbial communities shifts that are associated with the introduction of biofumigants in the soil.

Well it seems as whatever research I do or crop I work with, it will come down there is always one common aspect, Rhizoctonia spp. I did a MS at Univristy of Idaho and my research focused on use of brassica seed meals to manage weeds and guess what, Rhizoctonia solani in wheat, tomato and pepper!
 Probably thinking, how much salsa can we make out of this!



Below are some of  my recent the pictoral encounters with R. solani on rice